Awesome Health

Curated list of awesome open source healthcare software, libraries, tools and resources. Each link has been vetted to ensure the project is active and provides value to healthcare facilities, providers, developers, policy experts, and/or research scientists.

EHR
Specifications
Prescribing
Nursing
Imaging
Dental
Laboratory
Libraries
Frameworks
Applications
Personal Health Record
Telemedicine
Integration
Research
Hardware
Bioinformatics
Books
Data
Datasets
Design
Enterprise Master Patient Index
Machine Learning
Compliance
Asset Management
Logistics
Analytics

EHR

Akello - Integrated Mental Health Infrastructure
Bahmni - Electronic Medical Record and hospital system.
Cottage Med - Electronic Medical Record software designed by physicians.
GNU Health - Electronic Medical Record, Hospital Management, and Health Information System.
GNUmed - Electronic Medical Record software.
EHRBase OpenEHR Clinical Data Repository.
EHRServer - CaboLabs EHRServer.
ERPNext - Modules that help manage patients, appointments, consultations, lab tests, and billing.
FreeMedForms EMR - Electronic Medical Record software.
HospitalRun - Helps provide the most modern Hospital Information System possible to the least resourced environments.
HOSxP - Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals.
LibreHealth EHR - Clinically-focused Electronic Health Record System.
MedinTux - French Medical Practice Management System.
Medplum - Developer platform that enables flexible and rapid development of healthcare apps.
Odoo Medical - Universal Health and Hospital Information System.
OpenClinic - Medical Records System.
OpenEMR - Electronic Health Records and Medical Practice Management application.
OpenEyes - Electronic Medical Record application for ophthalmology.
Open Hospital - Electronic Medical Record software for underprivileged rural hospitals.
openMAXIMS - Full Patient Administration System designed for the NHS.
OpenMRS - Enterprise Electronic Medical Record System platform.
OSCAR EMR - OSCAR McMaster Project.
Ozone HIS - The entreprise-grade integrated health information system built with OpenMRS 3
Ripple - NHS-funded, community led initiative working towards an integrated Digital Care Record Platform.

Specifications

Continuity of Care Document - Continuity of Care Document specifications
DICOM Standards Browser - Provides an effective way to learn the DICOM standard and inspect DICOM attributes.
FHIR - Fast Health Interoperability Resources.
HL7 Version 2 - Specifications for all versions of HL7v2
OHDSI OMOP Common Data Model - Standardized data model for many healthcare concepts, awesome Github presence including scripts for many major relational databases.
OpenEHR - Open specification upon which software can be built.
Open mHealth - Open Standard For Mobile Health Data.
SMART on FHIR - Open standards based technology platform.

Prescribing

OpenEP - Suite of medicines management apps that improve the safety and efficiency of prescribing and medicines management.

Nursing

open-eObs - Observation and clinical assessment platform that offers a real-time view of all patients across a ward.

Imaging

3D Slicer - Cross-platform application for analyzing, visualizing and understanding medical image data.
Cornerstone - Open source project with a goal to deliver a complete web based medical imaging platform.
dcm4che - Clinical Image and Object Management.
Dicoogle - Dicoogle is an extensible, platform-independent and open-source PACS
Drishti - Tomography and electron-microscopy data visualizer for both scientists and lay people.
DICOMcloud - A standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services.
DICOM Server - OSS Implementation of DICOMweb standard.
DICOM Web Viewer - JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes.
Fiji - Open-source platform for biological-image analysis.
Horos - Medical image viewer.
InVesalius - Open source software for reconstruction of computed tomography and magnetic ressonance images.
ITK - Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions.
ITK-SNAP - Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness.
LibreHealth Radiology - Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals.
Kaapana - Open source toolkit for state of the art platform provisioning in the field of medical data analysis.
Kheops - Open source platform for sharing medical images
OHIF - OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker.
Omero - open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata
OpenREM - Radiation Exposure Monitoring for physicists.
OpenSlide - is a C library for reading whole slide image files.
Orthanc - Lightweight DICOM server for healthcare and medical research.
Papaya - Pure JavaScript medical research image viewer.
Slim - Interoperable web viewer and annotation tool for computational pathology.
Viv - multiscale visualization of high-resolution multiplexed bioimaging data on the web.
VTK - 3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques.

Dental

Open Dental - Dental Practice Management Software.
OpenMolar - Dental Practice Management Software.

Laboratory

OpenELIS - Laboratory Information System for Global Health.
SENAITE - Laboratory Information Management System.

Frameworks

API Server - FHIR Server to support patient- and clinician-facing apps.
Blaze - A FHIR Store with internal, fast CQL Evaluation Engine
CareKit - Open source software framework for creating apps that help people better understand and manage their health.
Clinical Meteor project - Meteor for FDA, HIPAA, and HL7 compliant applications.
Clinical Quality Language - Clinical Quality Language is a HL7 standard for the expression of clinical knowledge.
CyclOps - Framework for healthcare ML implementation.
FHIRBase - Storage based on the FHIR Standard.
FHIR Proxy - secure application that acts as an intermediary in the transfer of FHIR data to and from Azure API.
FHIR Works on AWS - FHIR Works on AWS deployment.
FHIR Server for Azure - A .NET Core implementation of the FHIR standard.
Inferno - providing testing tools for the FHIR
Intervention Engine FHIR Server - Generic FHIR server implementation in GoLang.
LinuxForHealth FHIR Server - Modular Java implementation of version 4 of the HL7 FHIR specification.
Medblocks UI - Web Components for rapid development of openEHR and FHIR systems.
Opal - Framework for building clinical applications.
ResearchKit - Software framework that makes it easy to create apps for medical research or for other research projects.
Spark - Public domain FHIR server developed in C#.
Sushi - a reference implementation command-line interpreter/compiler for FHIR
Swift-SMART - Swift SMART on FHIR framework for iOS and OS X.

Libraries

Android FHIR SDK - The Android FHIR SDK
Archie - OpenEHR Library written in Java.
Asymmetrik FHIR API Server - A secure REST implementation for the HL7 FHIR Specification.
Datamol - Molecular Manipulation Made Easy. A light Python wrapper build on top of RDKit.
DCMTK - DICOM Toolkit.
dicom - High Performance DICOM Medical Image Parser in GoLang.
ehrapy - Electronic Health Record analysis in Python.
Evil-DICOM - C# DICOM Library.
Fellow Oak DICOM - DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and Unity.
FHIRKit Client - Node FHIR client library.
FHIRModels - FHIRModels is a Swift library for FHIR resource data models.
FHIR .NET API - The official .NET API for HL7 FHIR.
fhir.js - JavaScript client for FHIR.
FHIR protocol buffers - A Google implementation of protocol buffers for FHIR.
Graphir - GraphQL interface over FHIR API
HAPI FHIR - Java API for HL7 FHIR Clients and Servers.
Hearth - A fast FHIR-compliant server focused on longitudinal data stores.
Health data standards - Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III.
Hermes - a SNOMED CT terminology server.
Metriport - Open-source universal API for healthcare data.
MITK - The Medical Imaging Interaction Toolkit.
nhs-numbers - Python package to provide utilities for NHS Numbers, including validity checks, normalisation, and generation.
Node HL7 - Node module that is bridged with the Java Hapi HL7 library.
Node-hl7-parser - Open source version of Redox's HL7 v2 to schema-fied JSON parser.
php-fhir - Tools for creating PHP classes from the HL7 FHIR Specification.
pynetdicom - A Python implementation of the DICOM networking protocol.
Python HL7 - Simple library for parsing messages of HL7 version 2.x into Python objects.
Python SMART on FHIR client - Flexible Python client for FHIR servers supporting the SMART on FHIR protocol.
Python 835 Parser - A simple-to-use Python interface to EDI 835 Health Care Claim Payment and Remittance Advice files.
Ruby FHIR - FHIR client implementation in Ruby.
Ruby HL7 - Ruby HL7 library.
Rust FHIR - Rust SDK for HL7 FHIR
TorchXRayVision - A library for chest X-ray datasets and models. Including pre-trained models.